isclogotitleMigale Bioinformatics Facility

We provide several services for scientists to deal with life sciences data



Open infrastructure dedicated to life sciences data processing



Dissemination of expertise in bioinformatics



Design and development of bioinformatics applications



Data analysis

Our Services

Migale, one of the Collective Scientific Infrastructure of INRAE, is part of the BioinfOmics Research Infrastructure of INRAE for bioinformatics. It is also a member of IFB (Institut Français de Bioinformatique), the French bioinformatics infrastructure and associated facility of France Génomique, the French genomic infrastructure for which we contribute to support different developments in bioinformatics.
A free account gives you access to work and save directories for your data, and access to the computer farm for your analyses.
The cluster farm is composed of about a thousand cores organized in different queues. We use the Sun Grid Engine queuing system for managing jobs.
You have a free access to our Galaxy server. Galaxy allows non-bioinformaticians to easily run tools without technical knowledges.
Command line tools, R packages and Galaxy wrappers are available on request and accessible to all migale authenticated users.
We provide an access to a large set of public biological databanks including whole genomes, nucleic and proteic sequences and other resources. They are updated automatically with BioMaJ or upon request.
We write tutorials to help you get familiar with tools, best practices, languages, etc.
Each year, we offer our "Bioinformatics by practicing" cycle. This cycle covers a broad spectrum of bioinformatics. The modules mix theoretical part and practical work.
We answer to the most common questions regarding the technical difficulties you can go through on our infrastructure.
Find all the ways to contact us.

Review of our 2023 training session

Submitted by sschbath on
cycle 2023

 

*** English version below ***

Notre cycle de formation « Bioinformatique par la pratique » 2023 s’est achevé mi septembre. 

Ce sont 15 modules différents qui ont été donnés représentant 27 jours de formation sur l’année.

Nous avons formé 108 apprenants, dont 64 INRAE (59 %), 42 académiques et 2 personnes du privé. Comme le montre la répartition par département des agents INRAE ci-dessous, la majorité des apprenants INRAE vient de MICA et BAP.

Planned shutdown of all services from September 25th to September 28th 2023

Submitted by vloux on
work in progress sign

Access to the Migale bioinformatics facilityhave been unavailable from Monday, September​ 25th to Thursday, September 28th 2023.

 

Expected duration of interruption

___________________________

 

Start: 25/09/2023 1pm

Unavailability: 25/09/2023 3pm

End  : 28/09/2023 5.10pm

 

Users affected by the incident

________________________

 

Introducing documents.migale.inrae.fr

Submitted by orue on
documents.migale.inrae.fr

We are gradually reorganizing the way we make documents available on the web. Training materials, tutorials, analysis reports, details of our publications and FAQs can now be accessed via a single website: https://documents.migale.inrae.fr. Developed in Quarto, this website will be the sole complement to our https://migale.inrae.fr website, where you will continue to find all application forms (account, tools, training...).

Sécurité / Security

Submitted by vmartin on

Compromission d’une machine virtuelle opérée par Migale

Le 13 février dernier, nous avons été alerté par Renater – via le service « Sécurité des Systèmes d’Information » (SSI) INRAE- d’une possible activité malveillante provenant d’une adr

Update Bioconductor

Submitted by vmartin on

 

Stable release of Bioconductor on R/RStudio is now 3.16

Bioconductor 3.16, consisting of 2183 software packages, 416 experiment data packages, 909 annotation packages, 28 workflows and 8 books.