isclogotitleMigale Bioinformatics Facility

We provide several services for scientists to deal with life sciences data

Open infrastructure dedicated to life sciences data processing

Dissemination of expertise in bioinformatics

Design and development of bioinformatics applications

Data analysis

Our Services

Migale, one of the Collective Scientific Infrastructure of INRAE, is part of the BioinfOmics Research Infrastructure of INRAE for bioinformatics. It is also a member of IFB (Institut Français de Bioinformatique), the French bioinformatics infrastructure and associated facility of France Génomique, the French genomic infrastructure for which we contribute to support different developments in bioinformatics.
A free account gives you access to work and save directories for your data, and access to the computer farm for your analyses.
The cluster farm is composed of about a thousand cores organized in different queues. We use the Sun Grid Engine queuing system for managing jobs.
You have a free access to our Galaxy server. Galaxy allows non-bioinformaticians to easily run tools without technical knowledges.
Command line tools, R packages and Galaxy wrappers are available on request and accessible to all migale authenticated users.
We provide an access to a large set of public biological databanks including whole genomes, nucleic and proteic sequences and other resources. They are updated automatically with BioMaJ or upon request.
We write tutorials to help you get familiar with tools, best practices, languages, etc.
Each year, we offer our "Bioinformatics by practicing" cycle. This cycle covers a broad spectrum of bioinformatics. The modules mix theoretical part and practical work.
We answer to the most common questions regarding the technical difficulties you can go through on our infrastructure.
Find all the ways to contact us.

Soucis techniques avec qsub et les mots de passe utilisateur /Technical issues with qsub and user password

Submitted by vloux on Fri, 04/29/2022 - 13:38
cone travaux

Quelques soucis techniques en cours sur la soumission de jobs et les mots de passe utilisateur

Bonjour à toutes et tous,
Nous rencontrons depuis quelques semaines des problèmes réseau aléatoires mais récurrents. Ceux-ci peuvent perturber la soumission de jobs en ligne de commande.
Les commandes qstat, qsub ou qacct peuvent renvoyer l'erreur suivante :
error: commlib error: got select error (Connection refused)

cone travaux

Introduction to text-mining with AlvisNLP

Submitted by orue on Thu, 03/31/2022 - 16:44
text-mining

La plateforme Migale, dans le cadre de son cycle de formation "Bioinformatique par la pratique" 2022, propose une formation intitulée "Introduction au text-mining avec AlvisNLP" en présentiel à Jouy-en-Josas les 2 et 3 juin 2022. Cette formation s’adresse aux (bio)informaticiens qui souhaitent acquérir des compétences théoriques et pratiques sur l'analyse de données textuelles. La formation abordera les méthodes de Reconnaissance D'Entités Nommées (REN) par des séances théoriques et pratiques.

text-mining