Our Services

Migale, one of the Collective Scientific Infrastructure of INRAE, is part of the BioinfOmics Research Infrastructure of INRAE for bioinformatics. It is also a member of IFB (Institut Français de Bioinformatique), the French bioinformatics infrastructure and associated facility of France Génomique, the French genomic infrastructure for which we contribute to support different developments in bioinformatics.
A free account gives you access to work and save directories for your data, and access to the computer farm for your analyses.
The cluster farm is composed of about a thousand cores organized in different queues. We use the Sun Grid Engine queuing system for managing jobs.
You have a free access to our Galaxy server. Galaxy allows non-bioinformaticians to easily run tools without technical knowledges.
Command line tools, R packages and Galaxy wrappers are available on request and accessible to all migale authenticated users.
We provide an access to a large set of public biological databanks including whole genomes, nucleic and proteic sequences and other resources. They are updated automatically with BioMaJ or upon request.
We write tutorials to help you to get a grip on tools, good practices, languages etc.
Each year, we offer our "Bioinformatics by practicing" cycle. This cycle covers a broad spectrum of bioinformatics. The modules mix theoretical part and practical work.
We answer to the most common questions regarding the technical difficulties you can go through on our infrastructure.
Find all the ways to contact us.

Informations sur l'utilisation de FROGS sous Galaxy

Submitted by orue on Wed, 12/15/2021 - 16:10

Comme vous le savez, FROGS est un outil en constante évolution. En conséquence, des mises à jour interviennet régulièrement.

Jusqu'à maintenant, les versions de FROGS cohabitaient dans l'interface, ce qui pouvait parfois entrainer des confusions. Depuis peu, Galaxy propose une nouvelle façon de gérer les versions d'outils (pour les outils récemment déployés). Un nouveau bouton apparaît en haut à droite du formulaire, et il est possible de choisir la version de l'outil.

New publication: FROGS: a powerful tool to analyse the diversity of fungi with special management of internal transcribed spacers

Submitted by orue on Fri, 09/10/2021 - 09:37

A very short newsletter to announce the release of the new FROGS article entitled "FROGS: a powerful tool to analyse the diversity of fungi with special management of internal transcribed spacers", which you can read here : https://academic.oup.com/bib/advance-article/doi/10.1093bib/bbab318/6354026?guestAccessKey=c3c28079-333a-432e-9d9e-b4c37da8284d.