A tutorial dedicated to the use of FROGS using its command line interface on the migale server is proposed here : https://tutorials.migale.inra.fr/posts/frogs-16s/. From a public dataset (Illumina 16S V3-V4), you will be able to run the full FROGS pipeline to create a BIOM file containing the OTUs, their abundances and their taxonomic affiliations.
Migale Bioinformatics Facility
We provide several services for scientists to deal with life sciences data
Access to the Galaxy instance will be unavailable from January 29th to February 2nd 2021.
Expected duration of interruption
Start: 29/01/2021 6pm
End (estimation) : 03/02/2021 8am
Users affected by the incident
- Users of the Galaxy instance
Update to version 20.09
Thank you for your understanding